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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgctctcgcctcagactcgggcccgatctagtcgctgagtctctcggccgccggattggcggcaaaatggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGCAAGAAGAACCTGCAGTACTATGAGATCTCGGCCAAGTCGAACTACAACT

Basic information

species Chlamydomonas reinhardtii
transcript EDP04368
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9210310|gb|BE337225.1|BE337225
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|6545757|gb|AV391541.1|AV391541
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10769352|gb|AV620177.1|AV620177
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161817517|gb|FC104967.1|FC104967
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|6546578|gb|AV392362.1|AV392362
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAAC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAAC
EST: gi|6542406|gb|AV388190.1|AV388190
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10774015|gb|AV624838.1|AV624838
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10768991|gb|AV619816.1|AV619816
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTCCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|49464380|gb|BP092293.1|BP092293
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGGCAGGTCAAGCCC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCC
EST: gi|22076582|gb|BQ825358.1|BQ825358
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTT
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTT
EST: gi|10772469|gb|AV623292.1|AV623292
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|16437014|gb|BM002234.1|BM002234
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161815180|gb|FC101503.1|FC101503
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|15692194|gb|BI716499.1|BI716499
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10771657|gb|AV622480.1|AV622480
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|23365486|gb|BU653306.1|BU653306
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161810373|gb|FC096071.1|FC096071
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|22073295|gb|BQ822633.1|BQ822633
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|15699711|gb|BI724016.1|BI724016
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10773916|gb|AV624739.1|AV624739
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGG
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGG
EST: gi|22076152|gb|BQ824928.1|BQ824928
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10769189|gb|AV620014.1|AV620014
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|14225696|gb|BG844512.1|BG844512
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10772119|gb|AV622942.1|AV622942
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCA
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCA
EST: gi|15691764|gb|BI716069.1|BI716069
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10778055|gb|AV634735.1|AV634735
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTT
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTT
EST: gi|22067355|gb|BQ817494.1|BQ817494
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161804309|gb|FC089677.1|FC089677
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10768138|gb|AV618963.1|AV618963
EST:     ACCTTGGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAG
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAG
EST: gi|14230461|gb|BG849277.1|BG849277
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10776745|gb|AV633425.1|AV633425
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCAC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCAC
EST: gi|161814538|gb|FC102343.1|FC102343
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|15372390|gb|BI531816.1|BI531816
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCG
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagG-TGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCG
EST: gi|161824160|gb|FC107769.1|FC107769
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|8576426|gb|BE129175.1|BE129175
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161811563|gb|FC098041.1|FC098041
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|15704472|gb|BI728777.1|BI728777
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|15696767|gb|BI721072.1|BI721072
EST:     ACCTTTGCCGCGTTTGCGAGNACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161804458|gb|FC092751.1|FC092751
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|6545602|gb|AV391386.1|AV391386
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10769984|gb|AV620809.1|AV620809
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACC
EST: gi|9441120|gb|BE441615.1|BE441615
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|49459982|gb|BP087895.1|BP087895
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAG
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAG
EST: gi|10771149|gb|AV621972.1|AV621972
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10775709|gb|AV632389.1|AV632389
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161801218|gb|FC087064.1|FC087064
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161796870|gb|FC083226.1|FC083226
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|16072810|gb|BI874806.1|BI874806
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10768112|gb|AV618937.1|AV618937
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161812831|gb|FC095111.1|FC095111
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|10768293|gb|AV619118.1|AV619118
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGC
EST: gi|161820035|gb|FC109708.1|FC109708
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|6543092|gb|AV388876.1|AV388876
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161794436|gb|FC080765.1|FC080765
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|161795840|gb|FC087642.1|FC087642
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
EST: gi|6542061|gb|AV387845.1|AV387845
EST:     ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAG                         GTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC
genomic: ACCTTTGCCGCGTTTGCGAGAACATTCCCATCGTGCTGTGCGGCAACAAGgtgcgtgctc ... tggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatctagtcgctgagtctctcggccgccggattggcggcaaaatggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGCAAGAAGAACCTGCAGTACTATGAGATCTCGGCCAAGTCGAACTACAACT
                                         aaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtgctctcgcctcagactcgggcccgatctagtcgctgagtctctcggccgccggattggcggcaaaatggctcgcagGTGGACGTGAAGAACCGCCAGGTCAAGCCCAAGCAGGTCACTTTCCACCGCAAGAAGAACCTGCAGTACTATGAGATCTCGGCCAAGTCGAACTACAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC