| 1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
| 21 5' 3' | 22 5' 3' |
...agcacaagggaaattacgcgcgtgggtgcatacagtgcgttcaggctcctgatgttatgcctcctgctcttctcggcgccaccgccccacacttgcacagATACCGACGGCTACATTGTGAATGATCTGGACCTGTTGGTGACGGTGGCGGAGGCGGGCGGCACCGGCACAGAGCGGCGCGTGTGGGGCAACAACCCGGA
| species | Chlamydomonas reinhardtii |
| transcript | EDP04363 |
| intron # | 20 |
| splice site | 3' |
| intron type | U2 |
ctcctgatgttatgcctcctgctcttctcggcgccaccgccccacacttgcacagATACCGACGGCTACATTGTGAATGATCTGGACCTGTTGGTGACGGTGGCGGAGGCGGGCGGCACCGGCACAGAGCGGCGCGTGTGGGGCAACAACCCGGA
tcctgat putative branch site (score: 3)
atgttat TA-rich tract
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcacaagggaaattacgcgcgtgggtgcatacagtgcgttcaggctcctgatgttatgcctcctgctcttctcggcgccaccgccccacacttgcacagATACCGACGGCTACATTGTGAATGATCTGGACCTGTTGGTGACGGTGGCGGAGGCGGGCGGCACCGGCACAGAGCGGCGCGTGTGGGGCAACAACCCGGA
agcacaa
- - - - - -aattacgc
- - - - - - - - - - - - - -gcataca