1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccgcactggccaaccgcaacccgtgcgggcgtcacacgagggacgccgccataatctgaaagggcatgtgcatgtgctgtgcccgtgcttgggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTCGACATGGGGCAGGTGGTCAACAGCGTGGGAAACGCGGAGCCGTTCACG
species | Chlamydomonas reinhardtii |
transcript | EDP04362 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCG GCGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTEST: gi|10789048|gb|AV626768.1|AV626768
genomic: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCGgtgagtgcgt ... gggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTT
EST: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCG GAGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTEST: gi|10793170|gb|AV630536.1|AV630536
genomic: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCGgtgagtgcgt ... gggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTT
EST: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCG GGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTEST: gi|10792556|gb|AV629922.1|AV629922
genomic: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCGgtgagtgcgt ... gggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTT
EST: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCG GGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTEST: gi|10786529|gb|AV643201.1|AV643201
genomic: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCGgtgagtgcgt ... gggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTT
EST: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCG GGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAANCCAGTT
genomic: AAAGATAGGCTGCAGCGTATGTTGGGGCCCAAGCTGGCCGGTCGTTGGCGgtgagtgcgt ... gggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTT
ccgccataatctgaaagggcatgtgcatgtgctgtgcccgtgcttgggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTCGACATGGGGCAGGTGGTCAACAGCGTGGGAAACGCGGAGCCGTTCACG
ataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcactggccaaccgcaacccgtgcgggcgtcacacgagggacgccgccataatctgaaagggcatgtgcatgtgctgtgcccgtgcttgggcgtgcagGGGATACAGCTGGCTGCAACGGCTGGCTATTGAGGAGACCGTAACCCAGTTCGACATGGGGCAGGTGGTCAACAGCGTGGGAAACGCGGAGCCGTTCACG
- - - - - -aaccgca
- - - - - - - - - - - - - - - -tcacacg
- - - - - - - - - - - - - - - - - - - - - - - - -cataatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcat