Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaccaacgcaacaacaaaacggacagcccagagtcgcgatcactgccgtagcatcatgcagcaggggtggttcgacgtaaaacatcatcccgcgctgtttgctgttgtcatgacctgcagACCAGAGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04358
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791744|gb|AV629110.1|AV629110
EST:     CGTGGAACATGCAGTGGGCGAGCAGCAAGGACCTGCACTGGTGCTCAAAG                         ACCAGAGCCG
genomic: CGTGGAACATGCAGTGGGCGAGCAGCAAGGACCTGCACTGGTGCTCAAAGgtaggaccaa ... tgacctgcagACCAGAGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggttcgacgtaaaacatcatcccgcgctgtttgctgttgtcatgacctgcagACCAGAGCCG
            taaaacat  TA-rich tract