1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGGCTAGGGCTTCGGGCGGATGTCTGGGCGGGAAGGCAAACTTCGCTTCCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccgtgaggcgggccccaggaggagacccttcatcacacacgcccctaacctgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04334 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATG GCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGTEST: gi|15702379|gb|BI726684.1|BI726684
genomic: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccg ... taacctgcagGCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGT
EST: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATG GCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGTEST: gi|49458420|gb|BP086333.1|BP086333
genomic: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccg ... taacctgcagGCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGT
EST: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATG GCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGTEST: gi|9210140|gb|BE337055.1|BE337055
genomic: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccg ... taacctgcagGCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGT
EST: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATG GCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGT
genomic: CCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccg ... taacctgcagGCGAGCGATTCGCCAAGAAGGACGGGAAAACTTACGACCCACTGGCTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTAGGGCTTCGGGCGGATGTCTGGGCGGGAAGGCAAACTTCGCTTCCAGCTGGCCCTCAGCGACGGCACAGCCCCCGCGTACTGGAAGCACGATGgtgagcaccgtgaggcgggccccaggaggagacccttcatcacacacgcccctaacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG