1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgcgacgcctgcgtcgtcaagctgcctgtgccatcgtggggagctgaaaatctcttcctacttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGGCCTTCTTGCAA
species | Chlamydomonas reinhardtii |
transcript | EDP04330 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCACACCAGCAATGGCAAG CTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGEST: gi|15697538|gb|BI721843.1|BI721843
genomic: TGCACACCAGCAATGGCAAGgtgagtgcga ... acttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACG
EST: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAG CTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGEST: gi|22071250|gb|BQ820588.1|BQ820588
genomic: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAGgtgagtgcga ... acttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACG
EST: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAG CTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGEST: gi|15698763|gb|BI723068.1|BI723068
genomic: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAGgtgagtgcga ... acttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACG
EST: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAG CTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACG
genomic: TCTCCTTAGGCGAGGCGCAGCTCCATCAGTTGCACACCAGCAATGGCAAGgtgagtgcga ... acttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACG
cgtcaagctgcctgtgccatcgtggggagctgaaaatctcttcctacttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGGCCTTCTTGCAA
tctcttcctacttcca CT-rich tract
tgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcgacgcctgcgtcgtcaagctgcctgtgccatcgtggggagctgaaaatctcttcctacttccacagCTGTTCGTCATGGGTGAAGTGGCAGTGGAGCTATTCCAGGAGTCGCCCACGGCCTTCTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT