1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAGTCTCTGCGGCTGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAGgtgggccatcacgcaccgcgttgccagtcagcaaatgaacggagcgagcgagggtgcggccgccgccgcctacccgcgtgtatgacccgcgtctgcgtct...
species | Chlamydomonas reinhardtii |
transcript | EDP04038 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAG GAGTGCATGCCGTTCCGCATGEST: gi|14232424|gb|BG851240.1|BG851240
genomic: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAGgtgggccatc ... gccgctgcagGAGTGCATGCCGTTCCGCATG
EST: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAG GAGTGCATGCCGTTCCGCATGCGCGGCATCTGGCTTGGTGTGGCAGEST: gi|23367540|gb|BU655358.1|BU655358
genomic: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAGgtgggccatc ... gccgctgcagGAGTGCATGCCGTTCCGCATGCGCGGCATCTGGCT-GGTGTGGCAG
EST: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCA-GTTCGCGCAG GAGTGCATGCCGTTCCGC
genomic: TGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAGgtgggccatc ... gccgctgcagGAGTGCATGCCGTTCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAGTCTCTGCGGCTGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCAAGTTCGCGCAGgtgggccatcacgcaccgcgttgccagtcagcaaatgaacggagcgagcgagggtgcggccgccgccgcctacccgcgtgtatgacccgcgtctgcgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcgt