1 5' 3' | 2 5' 3' |
CATTGAGGCCGGCGAGGCTGAGAACATCTTCGCGGAGGAGGGCGATGCCAAGCCCGCCGTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAGgtgcgggactcgccggtgtgtgcaagggaggcacgagggagggccgaggattgtgcccctcgcgcttgtttggcagcaagcggagaacggatgtgcgggc...
species | Chlamydomonas reinhardtii |
transcript | EDP04012 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCCGCCGTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAG GTCAAGCTGGCTGCTGCCTCTGCCTACGAGCGCCGCAAGGTGCCCAGCCGTEST: gi|10776304|gb|AV632984.1|AV632984
genomic: AGCCCGCCGTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAGgtgcgggact ... gcacatacagGTCAAGCTGGCTGCTGCCTCTGCCTACGAGCGCCGCAAGGTGCCCAGCCGT
EST: GTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAG GTCAAGCTGGCTGCTGCCTCTGCCTACGAGCGCCGCAAGGTGCCCAGCCGT
genomic: GTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAGgtgcgggact ... gcacatacagGTCAAGCTGGCTGCTGCCTCTGCCTACGAGCGCCGCAAGGTGCCCAGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGAGGCCGGCGAGGCTGAGAACATCTTCGCGGAGGAGGGCGATGCCAAGCCCGCCGTCGCACACAGCGCCCACGAGGGCCTGAAGCAGGAGACCCAGgtgcgggactcgccggtgtgtgcaagggaggcacgagggagggccgaggattgtgcccctcgcgcttgtttggcagcaagcggagaacggatgtgcgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgc