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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGGACAAAATGTTCAAGAAGCTCGCAAAGATAAACAAACCAGACAAGATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctcgctgctgcagcgctacctgtttgcctgggccggttgcccgcacgcagacccatgcggacgcattttactcatagtccatacgatgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04002
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15699344|gb|BI723649.1|BI723649
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|6542430|gb|AV388214.1|AV388214
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|15699343|gb|BI723648.1|BI723648
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|14239537|gb|BG858353.1|BG858353
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|22062800|gb|BQ814938.1|BQ814938
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|15699342|gb|BI723647.1|BI723647
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|10784564|gb|AV641236.1|AV641236
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
EST: gi|10792625|gb|AV629991.1|AV629991
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCG
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCG
EST: gi|15694620|gb|BI718925.1|BI718925
EST:     ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGA                         GCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA
genomic: ATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAgtgagttctc ... cgatgtgcagGCTCATCAAGGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAA