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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccttgtcctctgtcctaacagtgtacgctttagctgctgtttcgctcaagattgcttgtcacgcagGCTCGCGAGCGGCCAGGAGTCCGGCGTGATCAGGGGGAGAGTTCTTGTACCAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP03994
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10790225|gb|AV627591.1|AV627591
EST:     TCCAGAATGAACGCCCTTTGCTCGCTTCTCTTAGTGCTAGGACTACTAGG                         GCTCGCGAGCGGCCAGGAGTCCGGCGTGATCAGGGGGAGAGTTCTTGTACC
genomic: TCCAGAATGAACGCCCTTTGCTCGCTTCTCTTAGTGCTAGGACTACTAGGgtaagacctt ... tgtcacgcagGCTCGCGAGCGGCCAGGAGTCCGGCGTGATCAGGGGGAGAGTTCTTGTACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctaacagtgtacgctttagctgctgtttcgctcaagattgcttgtcacgcagGCTCGCGAGCGGCCAGGAGTCCGGCGTGATCAGGGGGAGAGTTCTTGTACCAC
 tcctaac  putative branch site (score: 1)