Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15371024|gb|BI530450.1|BI530450EST: GTCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAG GCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
genomic: GTCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAGgtgagcacag ... ccctctgcagGCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
EST:
gi|14234216|gb|BG853032.1|BG853032EST: GTCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAG GCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
genomic: GTCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAGgtgagcacag ... ccctctgcagGCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
EST:
gi|14234217|gb|BG853033.1|BG853033EST: GGCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAG GCCTCCGCCTATAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
genomic: GTCTCCGATGGCTCTCGCAAGGCTACGCGAGCGCGGATGCCACCATCCAGgtgagcacag ... ccctctgcagGCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accgcgttccacgtacccaactcagtcctcggccctctcctcgctccctctgcagGCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGTCGCAACTACCGCCAGCGCCTGCTGAACGCCCAGCTGCGCGACAAGGACC
tcctcggccctctcct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcacagtctcgaatgcgctacattcatacttgggatgcataggagctcgcttgcagcttggacccacaaaccgcgttccacgtacccaactcagtcctcggccctctcctcgctccctctgcagGCCTCCGCCTCTAACGCGGTCTACACGCCCGCCGAGGCTCAGTTCCTGGGTCGCAACTACCGCCAGCGCCTGCTGAACGCCCAGCTGCGCGACAAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC