1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcttgttggacgcatctgtaccagcgggctccctgtggcatgccgcgctgtggcagattgcgccatccatcctccctgtccttgactgtcacgccttctcgttgctgcccgtcgctgaccctgcagGAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAGCAGCACTTCGCCATCCACAGCAT
species | Chlamydomonas reinhardtii |
transcript | EDP03882 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGG GAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAGEST: gi|8513602|gb|BE121497.1|BE121497
genomic: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGGgtgagcttgt ... gaccctgcagGAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAG
EST: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGG GAAACGCTGTGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAGEST: gi|15694309|gb|BI718614.1|BI718614
genomic: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGGgtgagcttgt ... gaccctgcagGAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAG
EST: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGG GAAACGCTGTGCATGCAGATTCATCGAGATG
genomic: TGAACTCGGACGAGTACAACTTCCTGCGCAAGATGCACAACAAGCAGCGGgtgagcttgt ... gaccctgcagGAAACGCTGCGCAAGCAGAT-CATCGAGATG
ctccctgtccttgactgtcacgccttctcgttgctgcccgtcgctgaccctgcagGAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAGCAGCACTTCGCCATCCACAGCAT
cgctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttgttggacgcatctgtaccagcgggctccctgtggcatgccgcgctgtggcagattgcgccatccatcctccctgtccttgactgtcacgccttctcgttgctgcccgtcgctgaccctgcagGAAACGCTGCGCAAGCAGATCATCGAGATGGTGCTCGCTACCGACATGAAGCAGCACTTCGCCATCCACAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC