Sequence
atgc intronic sequence ATGC exonic sequenceGAGCAGCTGCGCAACAAGAAGGAGCAGCTGCGCAACAAGGAGGCGCAGCTGCGCAAAGAGAAGGAGCAGCTGCGACTCTTGGAGCAAGCGCACCCGAACGgtgagcgttcagggcgccgaggagccgaggagccgaagcggggctcgcttgcaccttgccttgagagctgtgacacctgccctgggtccattctgaccag...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP03848 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10784421|gb|AV641093.1|AV641093EST: GCGCAAAGAGAAGGAGCAGCTGCGACTCTTGGAGCAAGCGCACCCGAACG GGTCCCAGCTGCAGGCGCAGCTCGATGCGCTGCCAAGCCCCTCGGACATGG
genomic: GCGCAAAGAGAAGGAGCAGCTGCGACTCTTGGAGCAAGCGCACCCGAACGgtgagcgttc ... atactcatagGGTCCCAGCTGCAGGCGCAGCTCGATGCGCTGCCAAGCCCCTCGGACATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCAGCTGCGCAACAAGAAGGAGCAGCTGCGCAACAAGGAGGCGCAGCTGCGCAAAGAGAAGGAGCAGCTGCGACTCTTGGAGCAAGCGCACCCGAACGgtgagcgttcagggcgccgaggagccgaggagccgaagcggggctcgcttgcaccttgccttgagagctgtgacacctgccctgggtccattctgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtcc