1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgcgtgtatgccgtgccgtgcccgctgctccaaccccacctacccaatccacccacccaccaacccaccaacccacccatccaccaaccccgcattcagATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTGCCCATGGACAACGTGTACGAGGTGTTCACCACGCCGCGCGAGCAGACCG
species | Chlamydomonas reinhardtii |
transcript | EDP03728 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGTTTCTTCTTCTTCCGGAAAGAGGACGCGGAGGCGTTGATAGAGAAG ATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTGEST: gi|15369225|gb|BI528651.1|BI528651
genomic: TGGGTTTCTTCTTCTTCCGGAAAGAGGACGCGGAGGCGTTGATAGAGAAGgtgggggacg ... ccgcattcagATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTG
EST: TGGGTTTCTTCTTCTTCCGGAAAGAGGACGCGGAGGCGTTGATAGAGAAG ATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTG
genomic: TGGGTTTCTTCTTCTTCCGGAAAGAGGACGCGGAGGCGTTGATAGAGAAGgtgggggacg ... ccgcattcagATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgcgtgtatgccgtgccgtgcccgctgctccaaccccacctacccaatccacccacccaccaacccaccaacccacccatccaccaaccccgcattcagATCCGGGAGGAGAACCCGCGCCTGGCCCGTGACTCCAAGATCCTGCGTGTGCCCATGGACAACGTGTACGAGGTGTTCACCACGCCGCGCGAGCAGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - gtgtatg
- - - - - - - - - - - - - - - - aacccca
- - - - - - - - - - - - - - - - - - - - ctaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccca