1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gccgccagtcgggcgcccagcacacatgcccacctctagcagcctcccttgcacacctggccgtccacgaccgcgacggcgtcgcaacggcaccccacagGCACGGACGAGAACGGGCAGGCGTTTGAGTGGCTGGCGCGGCGCTGCCGAAAGCGCGTCAAGCAACCGTACGAGTGCCCGCGCCCGCCCCCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP02798 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGTACAGGCGCGTGGGGCACAAGCCGCTGCTGCTGGCGACCGTGCGAG GCACGGACGAGAACGGGCAGGCGTTTGAGTGGCTGGCGCGGCGCTGCCGAAEST: gi|15696248|gb|BI720569.1|BI720569
genomic: GCCGTACAGGCGCGTGGGGCACAAGCCGCTGCTGCTGGCGACCGTGCGAGgtaggggcag ... caccccacagGCACGGACGAGAACGGGCAGGCGTTTGAGTGGCTGGCGCGGCGCTGCCGAA
EST: GCCGTACAGGCGCGTGGGGCACAAGCCGCTGCTGNTGGCGACCGTGCGAG GCACGGACGAGAACGGGCAGGCGTTTGAGTGGATGGCGCGGCGCTGCCGAA
genomic: GCCGTACAGGCGCGTGGGGCACAAGCCGCTGCTGCTGGCGACCGTGCGAGgtaggggcag ... caccccacagGCACGGACGAGAACGGGCAGGCGTTTGAGTGGCTGGCGCGGCGCTGCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgccagtcgggcgcccagcacacatgcccacctctagcagcctcccttgcacacctggccgtccacgaccgcgacggcgtcgcaacggcaccccacagGCACGGACGAGAACGGGCAGGCGTTTGAGTGGCTGGCGCGGCGCTGCCGAAAGCGCGTCAAGCAACCGTACGAGTGCCCGCGCCCGCCCCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - -gcacaca
- - - - - - - - - - - - - tgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - acacctg