1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGGAGGTGCTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAAgtgggtcggccggccggggtcaccacatgccggggctaggggcgtgcctagcgagctgtgggccgggagctgtgggctgtgggttggcgggctgctgggg...
species | Chlamydomonas reinhardtii |
transcript | EDP02773 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAA TCACTGTGTGGCGCTGCGGGAGTGGTTCGACTACCGCGGACACGTCTGCATEST: gi|10786553|gb|AV643225.1|AV643225
genomic: CTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAAgtgggtcggc ... cacgccgcagTCACTGTGTGGCGCTGCGGGAGTGGTTCGACTACCGCGGACACGTCTGCAT
EST: CTGGAGGTGCTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAA TCACTGTGTGGCGCTGCGGGAGTGGTTCGACTACC
genomic: CTGGAGGTGCTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAAgtgggtcggc ... cacgccgcagTCACTGTGTGGCGCTGCGGGAGTGGTTCGACTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGAGGTGCTGAACACGCTGGAGAAGAACGACCCCTGCGGCCTCAAgtgggtcggccggccggggtcaccacatgccggggctaggggcgtgcctagcgagctgtgggccgggagctgtgggctgtgggttggcgggctgctgggg
TGGAGG
- - - - - - - - GCTGGA
- - - - - - - - - TGGAGA
- - - - - - - - - - GGAGAA
- - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggt