Sequence
atgc intronic sequence ATGC exonic sequence...gacacacgctcacacaccgctcactcacacaccgctcactcactcactcactcactcacacacgcacgcacacatacacacgcacgcacgccccccgcagCCCGAGAACATCCTGCTCAAAAGCCCGCACAGCGGCGACATCAAGCTGATCGACTTTGGCTCGGCCTGCTTCGAGAACCGCACCGTCTACTCCTACATAC
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP02763 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actcactcactcacacacgcacgcacacatacacacgcacgcacgccccccgcagCCCGAGAACATCCTGCTCAAAAGCCCGCACAGCGGCGACATCAAGCTGATCGACTTTGGCTCGGCCTGCTTCGAGAACCGCACCGTCTACTCCTACATAC
cactcac putative branch site (score: 2)
cgcccccc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gacacacgctcacacaccgctcactcacacaccgctcactcactcactcactcactcacacacgcacgcacacatacacacgcacgcacgccccccgcagCCCGAGAACATCCTGCTCAAAAGCCCGCACAGCGGCGACATCAAGCTGATCGACTTTGGCTCGGCCTGCTTCGAGAACCGCACCGTCTACTCCTACATAC
-acacacg
- - - - - -acacacc
- - - - - - - - - gctcact
- - - - - - - - - - tcactca
- - - - - - - - - - - - - - - - - - -actcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaca