1 5' 3' | 2 5' 3' | 3 5' 3' |
...caagctgtaactctagtgtctgtgaacgcatttactgctgtgccaattggactaacattcaactgcttgacctgagacgttgataccgcacgcgctgcagCGAGACCACGCTGGACTTTTGGATGTCGTCAAGCCAGCATGCTGCCAGCCCGTGGGCTCCGACGCTGAAATCAACAGCCGCACAGCTGCGTTGTGCTAAT
species | Chlamydomonas reinhardtii |
transcript | EDP02757 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
attggactaacattcaactgcttgacctgagacgttgataccgcacgcgctgcagCGAGACCACGCTGGACTTTTGGATGTCGTCAAGCCAGCATGCTGCCAGCCCGTGGGCTCCGACGCTGAAATCAACAGCCGCACAGCTGCGTTGTGCTAAT
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagctgtaactctagtgtctgtgaacgcatttactgctgtgccaattggactaacattcaactgcttgacctgagacgttgataccgcacgcgctgcagCGAGACCACGCTGGACTTTTGGATGTCGTCAAGCCAGCATGCTGCCAGCCCGTGGGCTCCGACGCTGAAATCAACAGCCGCACAGCTGCGTTGTGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - tgtctgt
- - - - - - - - - - - - - - catttac
- - - - - - - - - - - - - - - - - - - tgtgcca
- - - - - - - - - - - - - - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttg