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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcggctgcagccgggtctgggccagcatgtcaagcgccacaaaatgtccatggtcgttgtgcctgcagGCAAGCCTTCGGCGGCGATTCCGACCTCAACTCTGCGTGGCGTGGGGGTGCACAGCCAACGCGGCCAGCACGAAGGGATGACGACTTCCGTATCCCTGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP02731
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785505|gb|AV642177.1|AV642177
EST:     TTTGATGACGACTCATCGCTGACGCCAGCGCAGCTCATCGCCAAGCAAAA                         GCAAGCCTTCGGCGGCGATTCCGACCTCAACTCTGCGTGGCGTGGGGGTGC
genomic: TTTGATGACGACTCATCGCTGACGCCAGCGCAGCTCATCGCCAAGCAAAAgtgagtcggc ... gtgcctgcagGCAAGCCTTCGGCGGCGATTCCGACCTCAACTCTGCGTGGCGTGGGGGTGC
EST: gi|49470730|gb|BP098591.1|BP098591
EST:     TTTGATGACGACTCATCGCTGACGCCAGCGCAGCTCATCGCCAAGCAAAA                         GCAAGCCTTCGGCGGAGATTCCGACCTC
genomic: TTTGATGACGACTCATCGCTGACGCCAGCGCAGCTCATCGCCAAGCAAAAgtgagtcggc ... gtgcctgcagGCAAGCCTTCGGCGGCGATTCCGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtctgggccagcatgtcaagcgccacaaaatgtccatggtcgttgtgcctgcagGCAAGCCTTCGGCGGCGATTCCGACCTCAACTCTGCGTGGCGTGGGGGTGCACAGCCAACGCGGCCAGCACGAAGGGATGACGACTTCCGTATCCCTGCA
                         acaaaat  TA-rich tract