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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggggctgggcgcttgctgcctgtggtcaggatggaactaggcgggaagtgatttggcttcaggccgacgccgagcccgcatccttccagggctaggactgctttaccaaccacctgccgcccatgcctctgcagGCGACGACGAGGTAGACGATGACGATGACGGCGGTGAGGAGGTGTGCCCGCCCGGCTGCGACCAGTCGGTGTATGAGCGCGTGTGTGACCTGCGCGAGAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP01978
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9460775|gb|BE453404.1|BE453404
EST:     GGACGAGGACATGG                         GCGACGACGAGGTAGACGATGACGATGACGGCGGTGAGGAGGTGTGCCCGC
genomic: GGACGAGGACATGGgtgagggggc ... gcctctgcagGCGACGACGAGGTAGACGATGACGATGACGGCGGTGAGGAGGTGTGCCCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttccagggctaggactgctttaccaaccacctgccgcccatgcctctgcagGCGACGACGAGGTAGACGATGACGATGACGGCGGTGAGGAGGTGTGCCCGCCCGGCTGCGACCAGTCGGTGTATGAGCGCGTGTGTGACCTGCGCGAGAA
                                            tgcctct  CT-rich tract