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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcggtcaggggaacgccagtcagtgggtggcggggatggggaggggcatgcgcgtacgtcagccgggcattcaaagtgacaatagtacgttgaccctgctgcgttgtacgccaacagGTACGGTGACATGTGGGGCAACCAGACATACATCGACGACCCCGTTCTATTCCGCTAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01961
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693267|gb|BI717572.1|BI717572
EST:     TGCGGTCCGTGTACCGCTTGCA-GGCCGACAACCTGTTCTACGACTCACG                         GTACGGTGACATG
genomic: TGCGGTCCGTGTACCGCT-GCAAGGCCGACAACCTGTTCTACGACTCACGgtgagcgcgg ... acgccaacagGTACGGTGACATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgggcattcaaagtgacaatagtacgttgaccctgctgcgttgtacgccaacagGTACGGTGACATGTGGGGCAACCAGACATACATCGACGACCCCGTTCTATTCCGCTAG
                         cgttgac  putative branch site (score: 4)
      attcaaa  TA-rich tract