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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtcaagtaaggagcagttggcaagctggagaagcaataaggctggctgtagagatcagtggaaatctaaagccagtataataaacccaatctgttggctgcgtgcgtgcagGAGGGCACGCTGTCCCTTTCCGTCAGCCCCTCCTCGCCGCCGCCGCCGCCGCCGGGTTTCCACAACAGCACATTCACCGCTGCAACCGCTGGCGATGTGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP01954
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggaaatctaaagccagtataataaacccaatctgttggctgcgtgcgtgcagGAGGGCACGCTGTCCCTTTCCGTCAGCCCCTCCTCGCCGCCGCCGCCGCCGCCGGGTTTCCACAACAGCACATTCACCGCTGCAACCGCTGGCGATGTGA
       atctaaa  putative branch site (score: 3)
                 agtataataaa  TA-rich tract