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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCGGGGTCGGGCATCCCTGATGTGAAGGCCTACCTGAACGGCGTGGAGAGCCCCATCTTCAAAAACTTCTTCACTATTAAGACCTTTGTTGCCAAGgtgggtatgggaagggtgtgggtaagcgggcggaggcgggacgggtgaggcgggtgggggggggctggtgtggctgtgcgggagcaggctaccaatcggtgcacctgcgcacgagctgctaacatcccctactgcttgacaaccttaacgtactgcaattatgtgttcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01950
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP01950 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os08g20570.1 (Oryza sativa), 5'ss of exon 3
---------GGCCTCGGGGTCGGGCATCCCTGATGTGAAGGCCTACCTGAACGGCGTGGAGAGCCCCATCTTCAAAAACTTCTTCACTATTAAGACCTTTGTTGCCAAGgtgggtatgggaagggtgtgggtaagcgggcggaggcgggacgggtgaggcgggtgggggggggctggtgtggctgtgcgggagcaggctaccaatcggtgcacctgcgcacgagctgctaacatcccctactgcttgacaaccttaacgtactgcaattatgtgttcacag
         ||||   |||||||| ||||| || |||||||||||||| |||||||||||    ||         |||| ||||| |  | | |||  | | || ||||||| || |   |      |    |     ||| ||    | |   |||| |              |  |||   ||  | |  |   || ||  ||   |    ||   |                                                              
GTCGCCGGCGGCCGGCGGGTCGGGGATCCCGGAGGTGAAGGCCTACCTCAACGGCGTGGACGCGCC---------AAACATCTTCTCGCTCAGGACACTCGCTGTCAAGgtgcgt-tcctatcctcctctacagctcagcgcagattag-cacatgagccactcccaa-----ttactgtaattgc-cagttgt--gcgactgatttttttttctcttc--------------------------------------------------------------

upper sequence: EDP01950 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: LOC_Os04g55210.1 (Oryza sativa), 5'ss of exon 3
---------GGCCTCGGGGTCGGGCATCCCTGATGTGAAGGCCTACCTGAACGGCGTGGAGAGCCCCATCTTCAAAAACTTCTTCACTATTAAGACCTTTGTTGCCAAGgtggg-tatgggaagggtgtgggtaagcgggcggaggcgggacgggtgaggcgggtgggggggggctggtgtggctgtgcgggagcaggctaccaatcggtgcacctgcgcacgagctgctaacatcccctactgcttgacaaccttaacgtactgcaattatgtgttcacag
         |||  | ||||||||||||||||| |||||||| ||| ||||||| || ||   ||||          || | ||  || | |||||| | || |  ||||| |  ||  |  |          |  |  |      |   || |   |   |        |   ||  | | | ||| |  | | |   |      |                                                                           
GGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCG---------ACATATTTTCTCTAAAGACCCTGGTGGTGAAGgtagactactgttatatctctttcattcaagttatttcatcacagagtactggtaattcttgacacttat-tagttgtccctgtg-atttttttttccaaga-----------------------------------------------------------------------