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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgcatgtatatgggtgctcccgccacttcccatccactcaaagttcaggtgttgggatagtcgtgtcgctgcctgaatcgccactgcatttttacacccgcatgactccactgccgcagTTCTACCGCGAGAAGCTGCGTGCGGATGTGGAGGGCCGCGACTACACGCCGCCCTCACCCGCGGAAGTGGGGCCGCCTGTGCTGTCTGGCGGCAGCATGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01886
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695392|gb|BI719697.1|BI719697
EST:     TAGAGAAAAGCACGGACATCAAGGACAAGTACAACAGCAGAGCAGCAGAG                         TTCTACCGCGAGAAGCTGCGTGCGGATGTGGAGGGCCGCGACTACACGCCG
genomic: TAGAGAAAAGCACGGACATCAAGGACAAGTACAACAGCAGAGCAGCAGAGgtgcgcgcat ... actgccgcagTTCTACCGCGAGAAGCTGCGTGCGGATGTGGAGGGCCGCGACTACACGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgctgcctgaatcgccactgcatttttacacccgcatgactccactgccgcagTTCTACCGCGAGAAGCTGCGTGCGGATGTGGAGGGCCGCGACTACACGCCGCCCTCACCCGCGGAAGTGGGGCCGCCTGTGCTGTCTGGCGGCAGCATGG
                                         ctccact  CT-rich tract
                       atttttaca  TA-rich tract