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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagcagccaggatggcgcactgccggtgtgcttacttagggcctgtggccgctgacatcgctagggcggtcgcgttgtcactctccccgttgcctttgtctgctgcgtggtcctttgctgaacagGTAGCCTGGATTTGGACGTCCTTGATGCTGCTGCTAATCTGCGTCATGTTCGTTATGGGCCACCGATAAGGTATTCCCCGCTCAACAGTTCTTTGCGTTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01880
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15910690|gb|BI816474.1|BI816474
EST:     GCCAGCTGGAGGCCACGGCCAACCGGGTGCGGCGCGAAGAGAGACGCAAG                         GTAGCCTGGATTTGGACGTCCTTGATGCTGCTGCTAATCTGCGTCATGTTC
genomic: GCCAGCTGGAGGCCACGGCCAACCGGGTGCGGCGCGAAGAGAGACGCAAGgtatggagca ... tgctgaacagGTAGCCTGGATTTGGACGTCCTTGATGCTGCTGCTAATCTGCGTCATGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgttgtcactctccccgttgcctttgtctgctgcgtggtcctttgctgaacagGTAGCCTGGATTTGGACGTCCTTGATGCTGCTGCTAATCTGCGTCATGTTCGTTATGGGCCACCGATAAGGTATTCCCCGCTCAACAGTTCTTTGCGTTG
                                        tcctttgct  CT-rich tract