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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttgcttggggaatagggttgctttactggagagttgtcctactaccgtattgccattttacaggacgatgttgtgcgcatgtacttatcatctctccctccctcgctcttcttccctcccacagCGGTATGGCCAGCTACGCCGGCAAGGACGCCTCCTACAAGGGCTCTTGCAAGGACGCGGTCACCGGCGCCGTGTACACGGACGACACGGTGGCCTCCACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01872
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161801350|gb|FC090446.1|FC090446
EST:     AACGTGCTGATTGGCGACCTCACCGTCACCACCACCTCGGGCAACTTCAC                         CGGCATGGCTAGCTACGCCGGCAAGGACGCCTCCTACAAGGGCTCTTGCAA
genomic: AACGTGCTGATTGGCGACCTCACCGTCACCACCACCTCGGGCAACTTCACgtgagtattt ... cctcccacagCGGTATGGCCAGCTACGCCGGCAAGGACGCCTCCTACAAGGGCTCTTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgcgcatgtacttatcatctctccctccctcgctcttcttccctcccacagCGGTATGGCCAGCTACGCCGGCAAGGACGCCTCCTACAAGGGCTCTTGCAAGGACGCGGTCACCGGCGCCGTGTACACGGACGACACGGTGGCCTCCACG
            tacttatcatctctcc  CT-rich tract
            tacttat  TA-rich tract