1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcagcacacgtcaggggatggcaccgctggtgccgcgtcaaaaggtttctgatggacctgcttgtcacgcgcacacgctcccgaccttacctgcctacagGCTGTCCTCAAGTCCAGGCCGGCACACCGTCACCTCCCTCGCCCCTGCCTCCCTCCCCCCGGCCTCCCTCGCCGAAGCCGCCTTCGCCCCCTCCTCCTCC
species | Chlamydomonas reinhardtii |
transcript | EDP01838 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tttctgatggacctgcttgtcacgcgcacacgctcccgaccttacctgcctacagGCTGTCCTCAAGTCCAGGCCGGCACACCGTCACCTCCCTCGCCCCTGCCTCCCTCCCCCCGGCCTCCCTCGCCGAAGCCGCCTTCGCCCCCTCCTCCTCC
accttac putative branch site (score: 3)
ccttacct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagcacacgtcaggggatggcaccgctggtgccgcgtcaaaaggtttctgatggacctgcttgtcacgcgcacacgctcccgaccttacctgcctacagGCTGTCCTCAAGTCCAGGCCGGCACACCGTCACCTCCCTCGCCCCTGCCTCCCTCCCCCCGGCCTCCCTCGCCGAAGCCGCCTTCGCCCCCTCCTCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- agcacac
- - - - - - - - - - - - - - - - - - - - - - gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacgc