1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGTGCCGACATGACCAACGCGGTGGTGGACCGGGTGGACTTCACCAACGCCAACCTGAAGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCGgtgagcaggatgtagaggagggcctggggctttgggtggccagctgagcgcctgcgccggcggcgtcggcactgatgcgtaggcatccctcggcacgcct...
species | Chlamydomonas reinhardtii |
transcript | EDP01837 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAACCTGAAGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCG TTCGCGGGCGCGGACCTGGAGGGCAGTGTGTGGGAGGACGCGCTCATTGGCEST: gi|161792208|gb|FC079811.1|FC079811
genomic: CCAACCTGAAGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCGgtgagcagga ... caccttacagTTCGCGGGCGCGGACCTGGAGGGCAGTGTGTGGGAGGACGCGCTCATTGGC
EST: AGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCG TTCGCGGGCGCGGACCTGGAGGGCAGTGTGTGGGAGGACGCGCTCATTGGC
genomic: AGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCGgtgagcagga ... caccttacagTTCGCGGGCGCGGACCTGGAGGGCAGTGTGTGGGAGGACGCGCTCATTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGCCGACATGACCAACGCGGTGGTGGACCGGGTGGACTTCACCAACGCCAACCTGAAGCGTGTCAAGTTCATTAACACAGTGGTCACCGGCGCCTCGgtgagcaggatgtagaggagggcctggggctttgggtggccagctgagcgcctgcgccggcggcgtcggcactgatgcgtaggcatccctcggcacgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcgt