1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgggaacagtgccagcggtaggggaacagtgcctgcctgtcgctgcgcccgcaaccagctccctggcaacaccgcctgtctatactgtctacttgcagGCTGGCGGCGCGGACAAGGCGCGGGAGATGGTCCGCCGCTGCCACGAGGCCCTGGACTCGCTGATGGACCCGGCGGCGGCTGTAGCGCCCGCGGCCGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP01824 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAATGGCTGATGCGGGCGCACTTCGAGAGCAGCTGCCAGGGGCCTGGAG GCTGGCGGCGCGGACAAGGCGNCGG-AGATGGTCCGNCGCTGCCACGAGG
genomic: GGAATGGCTGATGCGGGCGCACTTCGAGAGCAGCTGCCAGGGGC-TGGAGgtgagcggag ... ctacttgcagGCTGGCGGCGCGGACAAGGCG-CGGGAGATGGTCCGCCGCTGCCACGAGG
tgcgcccgcaaccagctccctggcaacaccgcctgtctatactgtctacttgcagGCTGGCGGCGCGGACAAGGCGCGGGAGATGGTCCGCCGCTGCCACGAGGCCCTGGACTCGCTGATGGACCCGGCGGCGGCTGTAGCGCCCGCGGCCGCAG
tctactt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgggaacagtgccagcggtaggggaacagtgcctgcctgtcgctgcgcccgcaaccagctccctggcaacaccgcctgtctatactgtctacttgcagGCTGGCGGCGCGGACAAGGCGCGGGAGATGGTCCGCCGCTGCCACGAGGCCCTGGACTCGCTGATGGACCCGGCGGCGGCTGTAGCGCCCGCGGCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - gcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctat