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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctagcgcttctgccgggtccaggggaggccgggtcgcttctactcgctcatgctgcccaagctaaatcgtcgccgccgaccaccctcccagccttccacacatccgcgaacacactacagtgcattcacactagcttacatttctctgaacagGTGTACCAGGGCGACATCAAGAACGGCAAGGCACCCATCGCCAAGGTGCCCATCGGCCCCACCGCCAACAACCCCAACGGCGTGCACCTGGCCGTGCAAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP01823
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatccgcgaacacactacagtgcattcacactagcttacatttctctgaacagGTGTACCAGGGCGACATCAAGAACGGCAAGGCACCCATCGCCAAGGTGCCCATCGGCCCCACCGCCAACAACCCCAACGGCGTGCACCTGGCCGTGCAAA
                                  agcttac  putative branch site (score: 3)
                                        catttctct  CT-rich tract
                                     ttacattt  TA-rich tract