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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccgccggcaagggaggcagcgctcgggtaacgcagggcgtgggggaggcaggagaagcagagaagtcaggtgctgggcgacgcgcggagccctttcgcacacaaggcagcattcacggacctgtgcaaccccataattcgcaatcgtgcagGACGAGGCAGGCGCATGGGCTCCGGGTGGCGGCGGTGCCGGCAGCGGCGGCGGTTACGGCGACCGCTCCCTGCCCTTCGGCTCCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01797
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694878|gb|BI719183.1|BI719183
EST:     GCCCCTCCGCCAACATCTACGATGCCGAGGTGTCCGTCAGCGCCAGCATG                         GACGAGGCAGGCGCATGGGCTCCGGGTGGCGGCGGTGCCGGCAACGGCGGC
genomic: GCCCCTCCGCCAACATCTACGATGCCGAGGTGTCCGTCAGCGCCAGCATGgtgagccgcc ... aatcgtgcagGACGAGGCAGGCGCATGGGCTCCGGGTGGCGGCGGTGCCGGCAGCGGCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacacaaggcagcattcacggacctgtgcaaccccataattcgcaatcgtgcagGACGAGGCAGGCGCATGGGCTCCGGGTGGCGGCGGTGCCGGCAGCGGCGGCGGTTACGGCGACCGCTCCCTGCCCTTCGGCTCCAAG
                                    ataatt  TA-rich tract