1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacacacacacacacaaacacatcagtaaaccccctctcataaatcacacacacgacaacgtaacaaaaccctttcgctgcccgtgtgctgccggggcagTTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTGGCCATGTGGACCATGTTGCCCGTGGAGAACGGCGAGGGCATCCAGGTGC
species | Chlamydomonas reinhardtii |
transcript | EDP01103 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACCACGGGCGCCGGTGCTGTGTCCGACATCCGCACCAGCAGCGGAATG TTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTGEST: gi|15696224|gb|BI720529.1|BI720529
genomic: CCACCACGGGCGCCGGTGCTGTGTCCGACATCCGCACCAGCAGCGGAATGgtgggtgggc ... gccggggcagTTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTG
EST: CCACCACGGGCGCCGGTGCTGTGTCCGACATCCGCACCAGCAGCGGAATG TTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTG
genomic: CCACCACGGGCGCCGGTGCTGTGTCCGACATCCGCACCAGCAGCGGAATGgtgggtgggc ... gccggggcagTTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTG
cacacacacgacaacgtaacaaaaccctttcgctgcccgtgtgctgccggggcagTTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTGGCCATGTGGACCATGTTGCCCGTGGAGAACGGCGAGGGCATCCAGGTGC
acgtaac putative branch site (score: 3)
taacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacacacacacacaaacacatcagtaaaccccctctcataaatcacacacacgacaacgtaacaaaaccctttcgctgcccgtgtgctgccggggcagTTCTACGAGCGCGGCGAGACGGAGCTGGTGAAGCGGATAGAGAATCGGTTGGCCATGTGGACCATGTTGCCCGTGGAGAACGGCGAGGGCATCCAGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-acacaca
- - - - - - - - -acacatc
- - - - - - - - - - - - - taaaccc
- - - - - - - - - - - - - - - - - - -tcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgct