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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCGCGACCGGGATGTGGCCACCCCAGCATCTTCATATACATCTCGACCAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaattggccacgttatttttggcaggacatctcctccgccgccctcaaatgccaggcgcggcccgcctttgctatgtatgtcatcgtatttgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01093
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6551308|gb|AV397092.1|AV397092
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGACGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|16435731|gb|BM000951.1|BM000951
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|49464846|gb|BP092759.1|BP092759
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGTGCAACGCAG                         CTGATTCTGCTGCTCA
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCA
EST: gi|23359881|gb|BU647701.1|BU647701
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|14239647|gb|BG858463.1|BG858463
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|22063426|gb|BQ815202.1|BQ815202
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCT
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCT
EST: gi|15692580|gb|BI716885.1|BI716885
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|23359055|gb|BU646875.1|BU646875
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
EST: gi|10783308|gb|AV639980.1|AV639980
EST:     CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAG                         CTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG
genomic: CAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaa ... gccctcgcagCTGATTCTGCTGCTCACGCTGTCTGTGGTGCTGCTCACGCTGCCGTGGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGCGCGACCGGGATGTGGCCACCCCAGCATCTTCATATACATCTCGACCAAGCGCTGCGGACACCCGTCGGGAGGACGAGGAGCACGGCGCAACGCAGgtgcggccaattggccacgttatttttggcaggacatctcctccgccgccctcaaatgccaggcgcggcccgcctttgctatgtatgtcatcgtatttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtattt