1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGGTGAAGATCAACAGCAATGAGGCCATTGAAATGGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgaggggggtggtgggcaaaggggcgtgagcgggggcgtgcatggggtatggaggggaactaaggggcgtggggcttaagaggcgcaaggatggcgttg...
species | Chlamydomonas reinhardtii |
transcript | EDP01088 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGG GTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCGEST: gi|22076257|gb|BQ825033.1|BQ825033
genomic: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgagggggg ... cgctgcgcagGTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCG
EST: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGG GTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCGEST: gi|16435616|gb|BM000836.1|BM000836
genomic: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgagggggg ... cgctgcgcagGTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCG
EST: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGG GTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCGEST: gi|23365647|gb|BU653467.1|BU653467
genomic: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgagggggg ... cgctgcgcagGTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCG
EST: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGG GTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCG
genomic: GGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgagggggg ... cgctgcgcagGTGCCGCGGTGGCTGCCGCCATCCGCATCGCCAAGCGGCCTGAGAACCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGAAGATCAACAGCAATGAGGCCATTGAAATGGCCCGGCGGCTGGCGGTGGAGGAGGGACTGCTATGCGGCATCTCGTCGGgtgaggggggtggtgggcaaaggggcgtgagcgggggcgtgcatggggtatggaggggaactaaggggcgtggggcttaagaggcgcaaggatggcgttg
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct