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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCGGTTCGCGGAGCTGGAGGAGCTCGCGGTCGTGCCCATTCTGCAGGCCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctggcgaaacagcgctcgggtccgccagaagttctggggtgtggccatccctgcttgtgggccatgtgcacggcagctaggtcggacggtcgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01069
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6543238|gb|AV389022.1|AV389022
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|14234511|gb|BG853327.1|BG853327
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|8514273|gb|BE122168.1|BE122168
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|16072378|gb|BI874374.1|BI874374
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|6545317|gb|AV391101.1|AV391101
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|34994213|gb|CF568130.1|CF568130
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAATGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|9459108|gb|BE452441.1|BE452441
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|4662699|gb|AI625899.1|AI625899
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|6544529|gb|AV390313.1|AV390313
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|6544707|gb|AV390491.1|AV390491
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|7593360|gb|AW707611.1|AW707611
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGC
EST: gi|10775670|gb|AV632350.1|AV632350
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGA
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|34994461|gb|CF568378.1|CF568378
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|34994212|gb|CF568129.1|CF568129
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|16072987|gb|BI874983.1|BI874983
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|10125837|gb|BE724541.1|BE724541
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
EST: gi|16431123|gb|BI996349.1|BI996349
EST:     CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCG                         AACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC
genomic: CCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctg ... gaccccgcagAACAAGAAGGGCAAGAAGAAGTAAGCGGCTCGCTGGAGTGGCGCCGGCGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCGGTTCGCGGAGCTGGAGGAGCTCGCGGTCGTGCCCATTCTGCAGGCCGGCAAGGCCGAGGACCCGTCGGCGAAGGAGAAGCCCGCTGCTGCCGCGgtaagggctggcgaaacagcgctcgggtccgccagaagttctggggtgtggccatccctgcttgtgggccatgtgcacggcagctaggtcggacggtcgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgc