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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAATGCGCGCTAAGgtgagtctcgatgcagcagttatgcaatgcacgctatgtctctaacaagcgcctgcgcgccgcattgcaagggtggcgccgcccagacacttcggcaactgtctctgacccgtctgccgcgcatgtgctgtgcctttttcatgaatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01067
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34982047|gb|CF555964.1|CF555964
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|10788624|gb|AV626344.1|AV626344
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34984177|gb|CF558094.1|CF558094
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34985808|gb|CF559725.1|CF559725
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34990420|gb|CF564337.1|CF564337
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34985511|gb|CF559428.1|CF559428
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34989863|gb|CF563780.1|CF563780
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34984178|gb|CF558095.1|CF558095
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34982586|gb|CF556503.1|CF556503
EST:     AAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: AAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34985012|gb|CF558929.1|CF558929
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCCCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|10789375|gb|AV645104.1|AV645104
EST:     AAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: AAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34987333|gb|CF561250.1|CF561250
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34985510|gb|CF559427.1|CF559427
EST:     GAAAAATGCGCGTTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34989864|gb|CF563781.1|CF563781
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34982048|gb|CF555965.1|CF555965
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34981523|gb|CF555440.1|CF555440
EST:     AAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: AAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
EST: gi|34985512|gb|CF559429.1|CF559429
EST:     GAAAAATGCGCGCTAAG                         TGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG
genomic: GAAAAATGCGCGCTAAGgtgagtctcg ... atgaatgcagTGGAGGAAGAAGCGTATGCGTCGGCTCAAGCGCAAGCGGCGGAAGATGCGG