1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgatccggccagatcccctccccaacacagctgtattcacgcacattcccccctccattcccccaacctcacccacccacctacctacctacccacacagGCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAGCCCACCGACCAGTTCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP01062 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCCAACCCCACTCGCTGCACGGAGTACAAGCTGCCCTTCAATGACCAG GCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAGEST: gi|49469294|gb|BP097155.1|BP097155
genomic: GCGCCAACCCCACTCGCTGCACGGAGTACAAGCTGCCCTTCAATGACCAGgtatggccgg ... acccacacagGCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAG
EST: GCGCCAACCCCACTCGCTGCACGGAGTACAAGCTGCCCTTCAATGACCAG GCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAG
genomic: GCGCCAACCCCACTCGCTGCACGGAGTACAAGCTGCCCTTCAATGACCAGgtatggccgg ... acccacacagGCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAG
ttcccccctccattcccccaacctcacccacccacctacctacctacccacacagGCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAGCCCACCGACCAGTTCTGG
acctcac putative branch site (score: 3)
cctaccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatccggccagatcccctccccaacacagctgtattcacgcacattcccccctccattcccccaacctcacccacccacctacctacctacccacacagGCGGTCCAGGGCTTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAGCCCACCGACCAGTTCTGG
- - - - - - - - - - - caacaca
- - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - acgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctac