1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtgtgtgatgccacaaaaaccccatccccgtacccactccctcccccgctccaccggcacccctactccccaccgccaccccccattccccaccccagGTGGGCGCCATGCCTCGGCGCCCCACCTCCTCCGACCTGGAGCTGGCCTACCTCAACGCCTCCGCTGCCTCCAGCCCCATCACCAAGACCGCCAAGTTCC
species | Chlamydomonas reinhardtii |
transcript | EDP01026 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCGCCCTGGCGCATCCTCCTCAAGCAGAAGGAGGAGTTCGTGCA----G GTGGGCNCCATGCCTNGGCGCCCCACCCTCCTCCGACCTGGAGCTGGCCTA
genomic: CGCGCCCTGGCGCATCCTCCTCAAGCAGAAGGAGGAGTTCGTGCAGGTGGgtggacgtgc ... cccaccccagGTGGGCGCCATGCCTCGGCGCCCCA-CCTCCTCCGACCTGGAGCTGGCCTA
ccccgctccaccggcacccctactccccaccgccaccccccattccccaccccagGTGGGCGCCATGCCTCGGCGCCCCACCTCCTCCGACCTGGAGCTGGCCTACCTCAACGCCTCCGCTGCCTCCAGCCCCATCACCAAGACCGCCAAGTTCC
ccaccccccattcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgtgtgatgccacaaaaaccccatccccgtacccactccctcccccgctccaccggcacccctactccccaccgccaccccccattccccaccccagGTGGGCGCCATGCCTCGGCGCCCCACCTCCTCCGACCTGGAGCTGGCCTACCTCAACGCCTCCGCTGCCTCCAGCCCCATCACCAAGACCGCCAAGTTCC
-tgtgtgt
- - - - - - ccacaaa
- - - - - - - - - -aacccca
- - - - - - - - - - - - - - - - -acccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccccc