Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcctgccctcggcatgggttagcaagcgcttggaagcgggcatgccgcatgcggcgctgaggttaccacacacacatacacacataaggtaacatgcagatgaaccggccctccgtctatgtcactttcttctcacatacacacacaaaaattgttgcctcggccctcagGGCTTCCGTTGGACGTGCTGCGGCTGCACCGGTGACATGCCCTGGGGCTGCGACCACCACGGCACGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01022
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgtcactttcttctcacatacacacacaaaaattgttgcctcggccctcagGGCTTCCGTTGGACGTGCTGCGGCTGCACCGGTGACATGCCCTGGGGCTGCGACCACCACGGCACGG
              ttctcac  putative branch site (score: 2)
                                       ttgcctc  putative PPT
                               aaaaattgtt  TA-rich tract