1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gggccccatggaaggagtgtgtcctgttgcgcggacttcatcacaaggctcctcaattcacgcctgcccacacatctgcccaccgcacgccccactccagGAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTCATCACCAACACCGCCGACAACGAGCGCGTGGTGGGGGCCCACTACCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP01021 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTACGTGTCCTACCTGAAGCCCCTGGAGTGGACCATGAACCACGAG GAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTCEST: gi|15695937|gb|BI720242.1|BI720242
genomic: AGGTGTACGTGTCCTACCTGAAGCCCCTGGAGTGGACCATGAACCACGAGgtcagccgcg ... cccactccagGAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTC
EST: AGGTGTACGTGTCCTACCTGAAGCCCCTGGAGTGGACCATGAACCACGAG GAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTC
genomic: AGGTGTACGTGTCCTACCTGAAGCCCCTGGAGTGGACCATGAACCACGAGgtcagccgcg ... cccactccagGAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTC
aggctcctcaattcacgcctgcccacacatctgcccaccgcacgccccactccagGAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTCATCACCAACACCGCCGACAACGAGCGCGTGGTGGGGGCCCACTACCTGG
ccccactcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggccccatggaaggagtgtgtcctgttgcgcggacttcatcacaaggctcctcaattcacgcctgcccacacatctgcccaccgcacgccccactccagGAGCACAACGGCGAGCCGGTGCGTGCCGACAACAGCGTATTCGTCAAGCTCATCACCAACACCGCCGACAACGAGCGCGTGGTGGGGGCCCACTACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -agtgtgt
- - - - - - - - - - - - - - - - - - - - tcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -attcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcacgc