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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgtggctttgcttggttgccaatgcagttggtgtttgacgcgcgtgagctcctttattcagttcatgttaccttgcatgcttgcagCTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGATTGTGAAGCCGGCGTTCTAGGGCTTCCGCCTGCCCTGAGCGCCAGCATCCGGCACGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01017
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6540911|gb|AV386695.1|AV386695
EST:     GCAAGGCGGCGGTGAACAAACGCAAGAGACTGCACTTCCTGTTTGTGGTG                         CTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGATTGTGAAG
genomic: GCAAGGCGGCGGTGAACAAACGCAAGAGACTGCACTTCCTGTTTGTGGTGgtgagtttgt ... atgcttgcagCTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGATTGTGAAG
EST: gi|16434145|gb|BI999371.1|BI999371
EST:     GCAAGGCGGCGGTGAACAAACGCAAGAGACTGCACTTCCTGTTTGTGGTG                         CTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGGTTGTGAAG
genomic: GCAAGGCGGCGGTGAACAAACGCAAGAGACTGCACTTCCTGTTTGTGGTGgtgagtttgt ... atgcttgcagCTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGATTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgacgcgcgtgagctcctttattcagttcatgttaccttgcatgcttgcagCTGAACATCTTTGCTGTTTTCTTATTCGGACTGATGATGTGGATTGTGAAGCCGGCGTTCTAGGGCTTCCGCCTGCCCTGAGCGCCAGCATCCGGCACGC
 gtttgac  putative branch site (score: 4)
                     tttattca  TA-rich tract