1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...actgctgccaggccctcacacgccacctgcgcaactcgcttgtccctcacgcattgccccaaaccgactccaaaaccgctggatccatcctcacttgcagTGGATCTACGACACGGACAAGATCCAGGATCTGTTGTCCCGCCACGGCCGCCGGGACGAGCCCGCTTTTTTCGAGCCGCCCTCCTGCCCGTACTACGAGT
species | Chlamydomonas reinhardtii |
transcript | EDP00989 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ctcacgcattgccccaaaccgactccaaaaccgctggatccatcctcacttgcagTGGATCTACGACACGGACAAGATCCAGGATCTGTTGTCCCGCCACGGCCGCCGGGACGAGCCCGCTTTTTTCGAGCCGCCCTCCTGCCCGTACTACGAGT
tcctcac putative branch site (score: 2)
tccatcctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgctgccaggccctcacacgccacctgcgcaactcgcttgtccctcacgcattgccccaaaccgactccaaaaccgctggatccatcctcacttgcagTGGATCTACGACACGGACAAGATCCAGGATCTGTTGTCCCGCCACGGCCGCCGGGACGAGCCCGCTTTTTTCGAGCCGCCCTCCTGCCCGTACTACGAGT
- - - - - - - - cacacgc
- - - - - - - - - - - -cacctgc
- - - - - - - - - - - - - - - - -actcgct
- - - - - - - - - - - - - - - - - - - - - - - - acgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaac