1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcgcatacgatgacttgccacatacataaaaacacacacacacgcgtcgtttgcccaattagagtaaagccgcacactaacattcacttgttctccagGTGCTCAACTTCTCCATCGCCTACGGCAAGACGGCGCACGGCCTGGCCGCCGACTTCAAGACCAGCAAGGAGGAGGCGCAGGCCACTGTGGACAA
species | Chlamydomonas reinhardtii |
transcript | EDP00978 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gcgtcgtttgcccaattagagtaaagccgcacactaacattcacttgttctccagGTGCTCAACTTCTCCATCGCCTACGGCAAGACGGCGCACGGCCTGGCCGCCGACTTCAAGACCAGCAAGGAGGAGGCGCAGGCCACTGTGGACAA
cactaac putative branch site (score: 1)
ttcacttgttctcc CT-rich tract
aattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcgcatacgatgacttgccacatacataaaaacacacacacacgcgtcgtttgcccaattagagtaaagccgcacactaacattcacttgttctccagGTGCTCAACTTCTCCATCGCCTACGGCAAGACGGCGCACGGCCTGGCCGCCGACTTCAAGACCAGCAAGGAGGAGGCGCAGGCCACTGTGGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- -cgcatac
- - - - - - - - - - -acataca
- - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca