1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagcacagagtcggtacacctcccctcgcgcgaccctgcacgctcccctaacccgccacgcccgtgcccatgcacctcactatactccatacacacgcagGCGGTCTCCAACACCTGGTAGACGCCGGCCTCACCAGCCTGCGCATCCTAGAGCTAGCCAACAACCGCATCTCGCGCGTCGAGGAGCTCGAGTCGCTCAA
species | Chlamydomonas reinhardtii |
transcript | EDP00976 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTTCCCAAGCTTGAGCGCCTCATTCTCACTGATAACCGCATCACAG GCGGTCTCCAACACCTGGTAGACGCCGGCCTCACCAGCCTGCGCATCCTAG
genomic: AAAGCTTCCCAAGCTTGAGCGCCTCATTCTCACTGATAACCGCATCACAGgtcggtgcgg ... acacacgcagGCGGTCTCCAACACCTGGTAGACGCCGGCCTCACCAGCCTGCGCATCCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcacagagtcggtacacctcccctcgcgcgaccctgcacgctcccctaacccgccacgcccgtgcccatgcacctcactatactccatacacacgcagGCGGTCTCCAACACCTGGTAGACGCCGGCCTCACCAGCCTGCGCATCCTAGAGCTAGCCAACAACCGCATCTCGCGCGTCGAGGAGCTCGAGTCGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - acagagt
- - - - - - -gtacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atactcc