1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATACCTGCCTCGGGCTTCAACGGCAACCAGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGGgtgagttgcagcatctatcagatttagactcactagttgcatgtgtggttggaagctaggcgctgtgtccagatgcatgcatacgccgatccgtccgcat...
species | Chlamydomonas reinhardtii |
transcript | EDP00966 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGG TGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCAEST: gi|14242299|gb|BG861115.1|BG861115
genomic: AGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGGgtgagttgca ... tgccacgcagTGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCA
EST: AGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGG TGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCAGCNCAGGCEST: gi|14242298|gb|BG861114.1|BG861114
genomic: AGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGGgtgagttgca ... tgccacgcagTGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCAGC-CAGGC
EST: GCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGG TGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCAGCCAGGCC
genomic: GCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGGgtgagttgca ... tgccacgcagTGCTACATGTACTCCCAGACTCCCTCGGACATCACCATGGTCAGCCAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATACCTGCCTCGGGCTTCAACGGCAACCAGGCACAGGGCCCCTGCCGTGCTTGGACATGGAATGCAGCCACCAAATGGgtgagttgcagcatctatcagatttagactcactagttgcatgtgtggttggaagctaggcgctgtgtccagatgcatgcatacgccgatccgtccgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc