1 5' 3' | 2 5' 3' |
GGCGCGCGAGGAGGCAGCGCGGATGGCTGAGCTGCTACGAGAGAAGCGGGTGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacgcgttgtgtgatggggtgctgtggggggcagcaggttcggcaaacggagctctgagtggagtggcgggtgcaggggttgggggcaggttgg...
species | Chlamydomonas reinhardtii |
transcript | EDP00957 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GC--AAGTGCAGCTGCAGCGGGCGGTGCGGCGTAAGGAGGAGCTGAACCGGEST: gi|15694095|gb|BI718400.1|BI718400
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGGEST: gi|15700179|gb|BI724484.1|BI724484
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCGCGAGGAGGCAGCGCGGATGGCTGAGCTGCTACGAGAGAAGCGGGTGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacgcgttgtgtgatggggtgctgtggggggcagcaggttcggcaaacggagctctgagtggagtggcgggtgcaggggttgggggcaggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgagt