1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcggcgctggctgtgtgagcgggaagaattcttggcgtttgcagcacctgctgaccgtactgaccgtccggccccctcgcgcacacctccccttaacagGGCGCGCTGGCCAAGATCACAGATGTCGTGACCAATGGGCAGTGGAGCCAAGCCCAAGAGCAAACCGTTATTATGCTGGAATGGTACACTGTCGCAGCAC
species | Chlamydomonas reinhardtii |
transcript | EDP00481 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cacctgctgaccgtactgaccgtccggccccctcgcgcacacctccccttaacagGGCGCGCTGGCCAAGATCACAGATGTCGTGACCAATGGGCAGTGGAGCCAAGCCCAAGAGCAAACCGTTATTATGCTGGAATGGTACACTGTCGCAGCAC
tactgac putative branch site (score: 1)
cacctcccctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcggcgctggctgtgtgagcgggaagaattcttggcgtttgcagcacctgctgaccgtactgaccgtccggccccctcgcgcacacctccccttaacagGGCGCGCTGGCCAAGATCACAGATGTCGTGACCAATGGGCAGTGGAGCCAAGCCCAAGAGCAAACCGTTATTATGCTGGAATGGTACACTGTCGCAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - tgtgtga
- - - - - - - - - - - - - - - - - -gcgtttg
- - - - - - - - - - - - - - - - - - - - - - -cacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacacc