1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' |
...aatggggggcttgatttacgccgcccacccatatgcgcctgctacccctcacccgcgctgcctccaccatcacgtgtacgcatccatatgttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAACCTGCTGGAGATCATCGGCATTGACTTCCTGGACATGCTGTAAAGCTAAA
species | Chlamydomonas reinhardtii |
transcript | EDO99103 |
intron # | 39 |
splice site | 3' |
intron type | U2 |
EST: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCG GCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAACEST: gi|49470698|gb|BP098559.1|BP098559
genomic: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCGgtgagcggcg ... ttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAAC
EST: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCG GCCGATGGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAACEST: gi|15702322|gb|BI726627.1|BI726627
genomic: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCGgtgagcggcg ... ttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAAC
EST: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCG GCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAAC
genomic: ACGAGCTCAAGGAGTCGCTCAGCAACCTGGCCGAGAACTTCGACACGGCGgtgagcggcg ... ttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAAC
ccctcacccgcgctgcctccaccatcacgtgtacgcatccatatgttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAACCTGCTGGAGATCATCGGCATTGACTTCCTGGACATGCTGTAAAGCTAAA
ccctcac putative branch site (score: 3)
atatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggggggcttgatttacgccgcccacccatatgcgcctgctacccctcacccgcgctgcctccaccatcacgtgtacgcatccatatgttgtctgcagGCCGATTGGATGCTGGCCAAGATGCAGGACGTGTCCGAGGGCCTGAGCAACCTGCTGGAGATCATCGGCATTGACTTCCTGGACATGCTGTAAAGCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - acccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccata