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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgtaattacatagcgctggtgctggcggctaggaagtttcggcgccagccctaacgccatggaaaacttggtgcttgcagGCTTCGCGTCGTCGCAGCTGTTCAACCAGGGTGTCTGCTACACGTATGATGATGTTATCTTCCACCCTGGCCACATCTTCTTTGCGGCCAACGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99099
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431193|gb|BI996419.1|BI996419
EST:     GAACGGTCACGCTGACGCTGTCTATGACG                         GCTTCGCGTCGTCGCAGCTGTTCAACCAGGGTGTCTGCTACACGTATGATG
genomic: GAACGGTCACGCTGACGCTGTCTATGACGgtgcgtgtaa ... gtgcttgcagGCTTCGCGTCGTCGCAGCTGTTCAACCAGGGTGTCTGCTACACGTATGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggctaggaagtttcggcgccagccctaacgccatggaaaacttggtgcttgcagGCTTCGCGTCGTCGCAGCTGTTCAACCAGGGTGTCTGCTACACGTATGATGATGTTATCTTCCACCCTGGCCACATCTTCTTTGCGGCCAACGAG
                       ccctaac  putative branch site (score: 2)
                                     aaaactt  TA-rich tract