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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcgatgcactgtcgcattccctagtgtcgcgtgcccgcccgtctatgacatttaccacagttgttggtgtacgggctctctaactcatctgctgatcaacttcatcatatgcaagttttgcaactgcctgctatgcgcttctccagGTGTCACCATGGCTGCCCGGCGGCAACTCGACCAAGTACTGCCAGTGGGTGCGATGGGCTGACGGAGACTTCACAACACAGCCGGTTCTCTTCTCCGTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO99087
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789331|gb|AV645060.1|AV645060
EST:     CTGCAATCGAGGGCGCGGGTGGTGTGCCGGTGCCTGGTGGCATCAACCAG                         GTGTCACCATGGCTGCCCGGCGGCAACTCGACCAAGTACTGCCAGTGGGTG
genomic: CTGCAATCGAGGGCGCGGGTGGTGTGCCGGTGCCTGGTGGCATCAACCAGgtgagtgcga ... gcttctccagGTGTCACCATGGCTGCCCGGCGGCAACTCGACCAAGTACTGCCAGTGGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatcaacttcatcatatgcaagttttgcaactgcctgctatgcgcttctccagGTGTCACCATGGCTGCCCGGCGGCAACTCGACCAAGTACTGCCAGTGGGTGCGATGGGCTGACGGAGACTTCACAACACAGCCGGTTCTCTTCTCCGTGC
 tgctgat  putative branch site (score: 3)
                                            cgcttctcc  putative PPT
            atcatat  TA-rich tract